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  Indian J Med Microbiol
 

Figure 5: RMSD plot of protein and ligand (ADMQ) during 50 ns simulation: (a) Protein Pfg 27; and (b) Protein Pfs 25. Lig Fit Prot shows the RMSD of a ligand when the protein-ligand complex is first aligned on the protein backbone of the reference followed by measuring the RMSD of the ligand heavy atoms. C-alpha (Cα) refers to the alpha carbon atoms of protein.

Figure 5: RMSD plot of protein and ligand (ADMQ) during 50 ns simulation: (a) Protein Pfg 27; and (b) Protein Pfs 25. Lig Fit Prot shows the RMSD of a ligand when the protein-ligand complex is first aligned on the protein backbone of the reference followed by measuring the RMSD of the ligand heavy atoms. C-alpha (Cα) refers to the alpha carbon atoms of protein.